PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_068034A6D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 186aa    MW: 21042 Da    PI: 9.0682
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_068034A6D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.61.7e-1262142191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e GF +r  ks+ + + +   +++ vC ++gk+  ek++         + +++C a +++ + +++ w++++ +  HnH+
  Traes_2BL_068034A6D.1  62 DFYNLYSWEKGFGIRYGKSRLNVERT-KCMQEIVCGCSGKAGVEKTR---------SCHCECPALIRLLRVEHNGWYIAEHRDTHNHS 139
                            6*****************99995544.67899********9998766.........899***************************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_2BL_068034A6D.1 140 LSP 142
                            986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-862142IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
IREPLGGTRG LRIGAAAPSR QPCPNRVSAF EKAVRRFAEN PTENVITPVI GTTFDSVGQA  60
YDFYNLYSWE KGFGIRYGKS RLNVERTKCM QEIVCGCSGK AGVEKTRSCH CECPALIRLL  120
RVEHNGWYIA EHRDTHNHSL SPNFGETIHW PSHKHIDVYI RDLVKQLRQN NVNLAKVYSI  180
IGGFLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.15e-76PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5B6E21e-139W5B6E2_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.12e-75(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-11FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]